Part I: Basic Statistics1. Experimental Statistics for Biological Sciences Heejung Bang and Marie Davidian2. Nonparametric Methods in Molecular Biology Knut M. Wittkowski and Tingting Song3. Basics of Bayesian Methods Sujit K. Ghosh4. The Bayesian t-Test and Beyond Mithat GönenPart II: Designs and Methods for Molecular Biology5. Sample Size and Power Calculation for Molecular Biology Studies Sin-Ho Jung6. Designs for Linkage Analysis and Association Studies of Complex Diseases Yuehua Cui, Gengxin Li, Shaoyu Li, and Rongling Wu7. Introduction to Epigenomics and Epigenome-Wide Analysis Melissa J. Fazzari and John M. Greally8. Exploration, Visualization, and Preprocessing of High Dimensional Data Zhijin Wu and Zhiqiang WuPart III: Statistical Methods for Microarray Data9. Introduction to the Statistical Analysis of Two-Color Microarray Data Martina Bremer, Edward Himelblau, and Andreas Madlung10. Building Networks with Microarray Data Bradley M. Broom, Waree Rinsurongkawong, Lajos Pusztai, and Kim-Anh DoPart IV: Advanced or Specialized Methods for Molecular Biology11. Support Vector Machines for Classification: A Statistical Portrait Yoonkyung Lee12. An Overview of Clustering Applied to Molecular Biology Rebecca Nugent and Marina Meila13. Hidden Markov Model and Its Applications in Motif Findings Jing Wu and Jun Xie14. Dimension Reduction for High Dimensional Data Lexin Li15. Introduction to the Development and Validation of Predictive Biomarker Models from High-Throughput Datasets Xutao Deng and Fabien Campagne16. Multi-GeneExpression-Based Statistical Approaches to Predicting Patients' Clinical Outcomes and Responses Feng Cheng, Sang-Hoon Cho, and Jae K. Lee17. Two-Stage Testing Strategies for Genome-Wide Association Studies in Family-Based Designs Amy Murphy, Scott T. Weiss, and Christoph Lange18. Statistical Methods for Proteomics Klaus JungPart V: Meta-Analysis for High-Dimensional Data19. Statistical Methods for Integrating Multiple Types of High-Throughput Data Yang Xie and Chul Ahn20. A Bayesian Hierarchical Model for High-Dimensional Meta Analysis Fei Liu21. Methods for Combining Multiple Genome-Wide Linkage Studies Trecia A. Kippola and Stephanie A. SantoricoPart VI: Other Practical Information22. Improved Reporting of Statistical Design and Analysis: Guidelines, Education, and Editorial Policies Madhu Mazumdar, Samprit Banerjee, and Heather L. Van Epps23. Stata Companion Jennifer Sousa Brennan